Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | TM1040_RS03475 | Not Available | - | 650134 - 651030 | 31719.1 |
| abc transporter permease | TM1040_RS03480 | Not Available | - | 651032 - 651949 | 33118.4 |
| abc transporter substrate-binding protein | TM1040_RS03485 | Not Available | - | 652050 - 653573 | 56898.2 |
| iclr family transcriptional regulator | TM1040_RS03490 | Not Available | + | 653725 - 654486 | 27942.7 |
| pyridoxal phosphate-dependent aminotransferase | TM1040_RS03495 | Not Available | + | 654670 - 655857 | 42841.9 |
| vi polysaccharide biosynthesis udp-n-acetylglucosamine c-6 dehydrogenase tvib | TM1040_RS03500 | Not Available | + | 655964 - 657247 | 47158.4 |
| asparaginase | TM1040_RS03505 | Not Available | + | 657267 - 658217 | 32760.2 |
| alanine/glycine:cation symporter family protein | TM1040_RS03510 | Not Available | + | 658318 - 659745 | 50547.5 |
| murr/rpir family transcriptional regulator | TM1040_RS03515 | Not Available | - | 659788 - 660702 | 33230.6 |
| pep/pyruvate-binding domain-containing protein | TM1040_RS03520 | Not Available | - | 660766 - 664617 | 140606.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.