Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dtmp kinase | TM1040_RS03425 | Not Available | + | 640077 - 640721 | 23647.1 |
| dna polymerase iii subunit delta' | TM1040_RS03430 | Not Available | + | 640718 - 641839 | 40114.3 |
| tatd family hydrolase | TM1040_RS03435 | Not Available | + | 641900 - 642703 | 29292.6 |
| mbl fold metallo-hydrolase | TM1040_RS03440 | Not Available | + | 642703 - 643500 | 29188.8 |
| aec family transporter | TM1040_RS03445 | Not Available | + | 643537 - 644469 | 33123.3 |
| peroxiredoxin | TM1040_RS03450 | Not Available | + | 644593 - 645138 | 20332.9 |
| m20 family metallopeptidase | TM1040_RS03455 | Not Available | - | 645205 - 646596 | 50814.0 |
| gamma-glutamyltransferase family protein | TM1040_RS03460 | Not Available | - | 646593 - 648158 | 54909.9 |
| abc transporter atp-binding protein | TM1040_RS03465 | Not Available | - | 648155 - 649138 | 35210.9 |
| abc transporter atp-binding protein | TM1040_RS03470 | Not Available | - | 649135 - 650130 | 35854.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.