Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fad-binding oxidoreductase | TM1040_RS03320 | Not Available | - | 616505 - 617992 | 53995.2 |
| 2fe-2s iron-sulfur cluster-binding protein | TM1040_RS03325 | Not Available | + | 618302 - 621514 | 118567.0 |
| 16s ribosomal rna | Not Available | Not Available | + | 622237 - 623698 | Not Available |
| Trna-ile | Not Available | Not Available | + | 623839 - 623915 | Not Available |
| Trna-ala | Not Available | Not Available | + | 623981 - 624056 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | + | 624606 - 627438 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | + | 627682 - 627796 | Not Available |
| Trna-met | Not Available | Not Available | + | 627848 - 627924 | Not Available |
| hypothetical protein | TM1040_RS03360 | Not Available | - | 628194 - 629282 | 41133.4 |
| aaa family atpase | TM1040_RS19950 | Not Available | - | 629292 - 630899 | 60389.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.