Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoadipate enol-lactonase | TM1040_RS03270 | Not Available | - | 608024 - 608818 | 28740.7 |
| threonine/serine dehydratase | TM1040_RS03275 | Not Available | - | 608968 - 609945 | 33535.1 |
| alpha/beta fold hydrolase | TM1040_RS03280 | Not Available | - | 609942 - 610790 | 31168.3 |
| haloacid dehalogenase type ii | TM1040_RS03285 | Not Available | - | 610813 - 611502 | 25069.5 |
| peptidylprolyl isomerase | TM1040_RS03290 | Not Available | + | 611669 - 612097 | 15179.0 |
| potd/potf family extracellular solute-binding protein | TM1040_RS03295 | Not Available | + | 612350 - 613423 | 38596.6 |
| lytic murein transglycosylase | TM1040_RS03300 | Not Available | + | 613574 - 614725 | 41477.9 |
| hypothetical protein | TM1040_RS03305 | Not Available | - | 614751 - 615059 | 10683.4 |
| hypothetical protein | TM1040_RS03310 | Not Available | - | 615049 - 616101 | 39096.0 |
| hypothetical protein | TM1040_RS03315 | Not Available | - | 616098 - 616508 | 14612.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.