Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-1 | TM1040_RS03220 | Not Available | - | 600920 - 601138 | 8314.16 |
| carbon-nitrogen hydrolase family protein | TM1040_RS03225 | Not Available | - | 601223 - 602101 | 31585.4 |
| gnat family n-acetyltransferase | TM1040_RS03230 | Not Available | - | 602195 - 602782 | 21538.2 |
| ketosteroid isomerase-related protein | TM1040_RS03235 | Not Available | - | 602782 - 603177 | 14575.0 |
| low molecular weight phosphatase family protein | TM1040_RS03240 | Not Available | - | 603178 - 603633 | 17369.6 |
| upf0262 family protein | TM1040_RS03245 | Not Available | - | 603637 - 604116 | 18287.8 |
| histidinol dehydrogenase | TM1040_RS03250 | Not Available | - | 604396 - 605700 | 45925.5 |
| Trna-thr | Not Available | Not Available | + | 605916 - 605990 | Not Available |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | TM1040_RS03260 | Not Available | + | 606235 - 607506 | 44783.6 |
| duf2948 family protein | TM1040_RS03265 | Not Available | + | 607506 - 607982 | 17681.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.