Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| m48 family metallopeptidase | TM1040_RS03170 | Not Available | - | 589306 - 590034 | 27991.7 |
| type i restriction endonuclease subunit r | TM1040_RS03175 | Not Available | - | 590038 - 593316 | 122327.0 |
| restriction endonuclease subunit s | TM1040_RS19935 | Not Available | - | 593428 - 594546 | 41283.1 |
| type i restriction-modification system subunit m | TM1040_RS03185 | Not Available | - | 594681 - 596180 | 56083.9 |
| bro-n domain-containing protein | TM1040_RS19695 | Not Available | + | 596707 - 597282 | 21476.6 |
| duf6538 domain-containing protein | TM1040_RS03195 | Not Available | - | 597614 - 598792 | 43861.3 |
| Trna-phe | Not Available | Not Available | + | 598854 - 598928 | Not Available |
| dna gyrase inhibitor yacg | TM1040_RS03205 | Not Available | - | 599009 - 599191 | 6689.81 |
| ribonuclease e/g | TM1040_RS03210 | Not Available | - | 599188 - 600210 | 36548.8 |
| maf family protein | TM1040_RS03215 | Not Available | - | 600207 - 600788 | 20933.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.