Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | TM1040_RS03135 | Not Available | - | 578094 - 579023 | 35189.1 |
| restriction endonuclease subunit s | TM1040_RS19920 | Not Available | - | 579025 - 580188 | 41985.6 |
| class i sam-dependent dna methyltransferase | TM1040_RS03145 | Not Available | - | 580185 - 581759 | 59188.0 |
| tyrosine-type recombinase/integrase | TM1040_RS03150 | Not Available | - | 582228 - 583835 | 60243.0 |
| alpa family transcriptional regulator | TM1040_RS20465 | Not Available | - | 583832 - 584233 | 15104.7 |
| helix-turn-helix transcriptional regulator | TM1040_RS19930 | Not Available | - | 584348 - 584530 | 6658.3 |
| tyrosine-type recombinase/integrase | TM1040_RS20595 | Not Available | - | 584726 - 585184 | 17136.3 |
| tyrosine-type recombinase/integrase | TM1040_RS03155 | Not Available | - | 585076 - 585936 | 32613.8 |
| bro-n domain-containing protein | TM1040_RS19685 | Not Available | - | 586363 - 586938 | 21476.6 |
| hypothetical protein | TM1040_RS03165 | Not Available | - | 587243 - 589153 | 69401.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.