Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sulfotransferase | TM1040_RS03075 | Not Available | + | 562625 - 563497 | 32554.9 |
| hypothetical protein | TM1040_RS03080 | Not Available | + | 563494 - 564360 | 31558.3 |
| succinate dehydrogenase iron-sulfur subunit | TM1040_RS03085 | Not Available | + | 564490 - 565269 | 29552.8 |
| hypothetical protein | TM1040_RS03090 | Not Available | + | 565805 - 566011 | 7116.38 |
| phytanoyl-coa dioxygenase family protein | TM1040_RS03100 | Not Available | - | 566500 - 567681 | 42867.3 |
| laci family dna-binding transcriptional regulator | TM1040_RS03105 | Not Available | + | 567761 - 568780 | 37250.1 |
| site-specific integrase | TM1040_RS03110 | Not Available | - | 569523 - 570299 | 28593.2 |
| is3-like element issisp1 family transposase | TM1040_RS03120 | Not Available | + | 570525 - 571621 | 42519.2 |
| dead/deah box helicase family protein | TM1040_RS03125 | Not Available | - | 572581 - 575973 | 127054.0 |
| duf262 and duf1524 domain-containing protein | TM1040_RS03130 | Not Available | - | 575970 - 578069 | 80070.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.