Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| malate dehydrogenase | TM1040_RS03025 | Not Available | - | 553904 - 554866 | 33533.5 |
| hypothetical protein | TM1040_RS03030 | Not Available | - | 555736 - 556047 | 10919.2 |
| hpch/hpai aldolase/citrate lyase family protein | TM1040_RS03035 | Not Available | + | 556410 - 557264 | 30021.2 |
| nnru family protein | TM1040_RS03040 | Not Available | + | 557330 - 557878 | 19728.9 |
| duf1737 domain-containing protein | TM1040_RS03045 | Not Available | + | 557883 - 558086 | 7485.84 |
| maoc family dehydratase | TM1040_RS03050 | Not Available | + | 558088 - 559128 | 37488.5 |
| histidine phosphatase family protein | TM1040_RS03055 | Not Available | + | 559224 - 559799 | 20853.6 |
| succinate dehydrogenase, cytochrome b556 subunit | TM1040_RS03060 | Not Available | + | 560022 - 560405 | 13948.5 |
| succinate dehydrogenase, hydrophobic membrane anchor protein | TM1040_RS03065 | Not Available | + | 560420 - 560791 | 13124.5 |
| succinate dehydrogenase flavoprotein subunit | TM1040_RS03070 | Not Available | + | 560816 - 562624 | 65226.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.