Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mapeg family protein | TM1040_RS02975 | Not Available | - | 543009 - 543401 | 14302.4 |
| hypothetical protein | TM1040_RS02980 | Not Available | - | 543398 - 543925 | 20280.9 |
| hypothetical protein | TM1040_RS02985 | Not Available | - | 543942 - 544349 | 14832.5 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | TM1040_RS02990 | Not Available | - | 544384 - 545889 | 51881.1 |
| 2-oxoglutarate dehydrogenase e1 component | TM1040_RS02995 | Not Available | - | 545904 - 548855 | 109671.0 |
| succinate--coa ligase subunit alpha | TM1040_RS03000 | Not Available | - | 549097 - 549984 | 30517.8 |
| glycosyltransferase family 25 protein | TM1040_RS03005 | Not Available | - | 550003 - 550842 | 30755.0 |
| adp-forming succinate--coa ligase subunit beta | TM1040_RS03010 | Not Available | - | 550901 - 552094 | 42308.9 |
| hypothetical protein | TM1040_RS20185 | Not Available | + | 552657 - 552914 | 9661.63 |
| putative nucleotide-diphospho-sugar transferase | TM1040_RS03020 | Not Available | - | 552904 - 553848 | 36018.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.