Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| zinc-ribbon domain-containing protein | TM1040_RS02925 | Not Available | - | 535485 - 536399 | 32972.3 |
| cell division atp-binding protein ftse | TM1040_RS02930 | Not Available | + | 536625 - 537302 | 24683.1 |
| cell division protein ftsx | TM1040_RS02935 | Not Available | + | 537299 - 538192 | 31545.8 |
| lysophospholipid acyltransferase family protein | TM1040_RS02940 | Not Available | + | 538189 - 538938 | 27759.5 |
| pyridoxamine 5'-phosphate oxidase family protein | TM1040_RS02945 | Not Available | + | 538916 - 539521 | 22029.4 |
| hypothetical protein | TM1040_RS02950 | Not Available | - | 539572 - 540042 | 17275.7 |
| ethd family reductase | TM1040_RS02955 | Not Available | - | 540098 - 540412 | 11395.5 |
| dihydrolipoyl dehydrogenase | TM1040_RS02960 | Not Available | - | 540502 - 541899 | 48568.9 |
| murein l,d-transpeptidase family protein | TM1040_RS02965 | Not Available | - | 542040 - 542600 | 19960.9 |
| mapeg family protein | TM1040_RS02970 | Not Available | - | 542597 - 543007 | 14839.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.