Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ilvd/edd family dehydratase | TM1040_RS02875 | Not Available | + | 519643 - 521358 | 61385.1 |
| sdr family nad(p)-dependent oxidoreductase | TM1040_RS02880 | Not Available | + | 521360 - 522130 | 27170.2 |
| 2-dehydro-3-deoxygalactonokinase | TM1040_RS02885 | Not Available | + | 522127 - 523041 | 32317.5 |
| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | TM1040_RS02890 | Not Available | + | 523050 - 523655 | 20862.2 |
| smp-30/gluconolactonase/lre family protein | TM1040_RS02895 | Not Available | + | 523652 - 524497 | 30710.1 |
| beta-galactosidase | TM1040_RS02900 | Not Available | + | 524505 - 526412 | 70860.6 |
| exonuclease sbccd subunit d | TM1040_RS02905 | Not Available | + | 526566 - 527798 | 43978.4 |
| atp-binding protein | TM1040_RS02910 | Not Available | + | 527798 - 531232 | 125767.0 |
| diaminopimelate decarboxylase | TM1040_RS02915 | Not Available | + | 531293 - 532558 | 45472.6 |
| tigr02302 family protein | TM1040_RS02920 | Not Available | + | 532652 - 535303 | 96000.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.