Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna | Not Available | Not Available | + | 511430 - 511544 | Not Available |
| Trna-met | Not Available | Not Available | + | 511596 - 511672 | Not Available |
| response regulator | TM1040_RS02840 | Not Available | - | 511757 - 512041 | 10540.7 |
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS20455 | Not Available | - | 512021 - 512283 | 9937.17 |
| abc transporter atp-binding protein | TM1040_RS02845 | Not Available | - | 512374 - 513432 | 38729.6 |
| iclr family transcriptional regulator | TM1040_RS02850 | Not Available | - | 513488 - 514279 | 28583.0 |
| abc transporter substrate-binding protein | TM1040_RS02855 | Not Available | + | 514420 - 515673 | 46450.3 |
| carbohydrate abc transporter permease | TM1040_RS02860 | Not Available | + | 515812 - 516735 | 34656.9 |
| carbohydrate abc transporter permease | TM1040_RS02865 | Not Available | + | 516735 - 517583 | 31433.2 |
| alpha-galactosidase | TM1040_RS02870 | Not Available | + | 517580 - 519646 | 76844.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.