Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ureidoglycolate lyase | TM1040_RS02780 | Not Available | - | 498896 - 499402 | 18307.7 |
| allantoinase puue | TM1040_RS02785 | Not Available | - | 499399 - 500814 | 52576.8 |
| hydroxyisourate hydrolase | TM1040_RS02790 | Not Available | + | 501014 - 501370 | 12831.0 |
| lysr family transcriptional regulator | TM1040_RS02795 | Not Available | - | 501443 - 502357 | 33625.6 |
| urate hydroxylase puud | TM1040_RS02800 | Not Available | + | 502467 - 503726 | 47223.6 |
| guanine deaminase | TM1040_RS02805 | Not Available | + | 503883 - 505187 | 47456.3 |
| 16s ribosomal rna | Not Available | Not Available | + | 505986 - 507447 | Not Available |
| Trna-ile | Not Available | Not Available | + | 507587 - 507663 | Not Available |
| Trna-ala | Not Available | Not Available | + | 507729 - 507804 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | + | 508354 - 511186 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.