Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2-oxo-hept-4-ene-1,7-dioate hydratase | TM1040_RS02730 | Not Available | - | 488329 - 489129 | 28676.3 |
| fumarylacetoacetate hydrolase family protein | TM1040_RS02735 | Not Available | - | 489126 - 489983 | 31368.2 |
| pyridoxal phosphate-dependent decarboxylase family protein | TM1040_RS02740 | Not Available | - | 489983 - 491395 | 52139.0 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | TM1040_RS02745 | Not Available | - | 491473 - 492453 | 37077.9 |
| 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | TM1040_RS02750 | Not Available | - | 492552 - 494063 | 54328.7 |
| 5-carboxymethyl-2-hydroxymuconate delta-isomerase | TM1040_RS02755 | Not Available | - | 494060 - 494455 | 14118.1 |
| homoprotocatechuate degradation operon regulator hpar | TM1040_RS02760 | Not Available | + | 494584 - 495018 | 16404.0 |
| glycerate kinase | TM1040_RS02765 | Not Available | - | 495015 - 496277 | 42814.3 |
| bifunctional allantoicase/(s)-ureidoglycine aminohydrolase | TM1040_RS02770 | Not Available | + | 496475 - 497305 | 30870.7 |
| uracil-xanthine permease family protein | TM1040_RS02775 | Not Available | - | 497379 - 498818 | 49166.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.