Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | TM1040_RS02585 | Not Available | - | 457908 - 458381 | 17507.2 |
| abc transporter atp-binding protein | TM1040_RS02590 | Not Available | - | 458378 - 459988 | 58320.8 |
| abc transporter permease | TM1040_RS02595 | Not Available | - | 459985 - 460800 | 28440.6 |
| abc transporter permease | TM1040_RS02600 | Not Available | - | 460797 - 461744 | 34065.7 |
| abc transporter substrate-binding protein | TM1040_RS02605 | Not Available | - | 461879 - 463357 | 53164.4 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | TM1040_RS02610 | Not Available | + | 463587 - 464429 | 29551.8 |
| pantoate--beta-alanine ligase | TM1040_RS02615 | Not Available | + | 464443 - 465285 | 30785.0 |
| glycerol kinase glpk | TM1040_RS02620 | Not Available | + | 465392 - 466876 | 53321.0 |
| flavin-dependent oxidoreductase | TM1040_RS02625 | Not Available | - | 466970 - 468223 | 45223.8 |
| isopentenyl-diphosphate delta-isomerase | TM1040_RS02630 | Not Available | - | 468295 - 468849 | 21154.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.