Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| degt/dnrj/eryc1/strs family aminotransferase | TM1040_RS02535 | Not Available | + | 445913 - 447013 | 39654.2 |
| glycosyltransferase family a protein | TM1040_RS19680 | Not Available | + | 447010 - 447975 | 36146.4 |
| gnat family n-acetyltransferase | TM1040_RS02545 | Not Available | - | 448036 - 448977 | 34379.9 |
| hypothetical protein | TM1040_RS02550 | Not Available | - | 448974 - 449903 | 34531.6 |
| acetyltransferase | TM1040_RS02555 | Not Available | - | 449905 - 450579 | 24832.4 |
| udp-n-acetylglucosamine-peptide n-acetylglucosaminyltransferase | TM1040_RS02560 | Not Available | + | 450816 - 452498 | 61360.2 |
| rhodanese-related sulfurtransferase | TM1040_RS02565 | Not Available | - | 452503 - 453402 | 33786.0 |
| bifunctional nicotinamidase/pyrazinamidase | TM1040_RS02570 | Not Available | + | 453595 - 454200 | 22064.1 |
| atp-binding protein | TM1040_RS02575 | Not Available | + | 454317 - 456554 | 82544.8 |
| nicotinate phosphoribosyltransferase | TM1040_RS02580 | Not Available | + | 456618 - 457907 | 48993.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.