Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nadh:ubiquinone reductase (na(+)-transporting) subunit e | TM1040_RS02485 | Not Available | - | 434778 - 435386 | 21356.8 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit d | TM1040_RS02490 | Not Available | - | 435386 - 436039 | 23673.6 |
| na(+)-translocating nadh-quinone reductase subunit c | TM1040_RS02495 | Not Available | - | 436039 - 436851 | 29002.5 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit b | TM1040_RS02500 | Not Available | - | 436844 - 438043 | 43873.3 |
| na(+)-translocating nadh-quinone reductase subunit a | TM1040_RS02505 | Not Available | - | 438048 - 439391 | 47543.1 |
| fad:protein fmn transferase | TM1040_RS02510 | Not Available | + | 439560 - 440591 | 36327.0 |
| (na+)-nqr maturation nqrm | TM1040_RS02515 | Not Available | + | 440622 - 440861 | 8688.87 |
| efflux rnd transporter permease subunit | TM1040_RS02520 | Not Available | - | 440986 - 444114 | 110880.0 |
| efflux rnd transporter periplasmic adaptor subunit | TM1040_RS02525 | Not Available | - | 444126 - 445181 | 37607.2 |
| sugar 3,4-ketoisomerase | TM1040_RS02530 | Not Available | + | 445506 - 445916 | 15733.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.