Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | TM1040_RS02385 | Not Available | - | 413357 - 414106 | 25944.8 |
| l-rhamnose mutarotase | TM1040_RS02390 | Not Available | - | 414112 - 414441 | 12937.3 |
| mandelate racemase/muconate lactonizing enzyme family protein | TM1040_RS02395 | Not Available | - | 414441 - 415550 | 40166.4 |
| abc transporter atp-binding protein | TM1040_RS02400 | Not Available | - | 415555 - 416649 | 40043.7 |
| carbohydrate abc transporter permease | TM1040_RS02405 | Not Available | - | 416653 - 417516 | 31755.5 |
| carbohydrate abc transporter permease | TM1040_RS02410 | Not Available | - | 417522 - 418418 | 33737.5 |
| extracellular solute-binding protein | TM1040_RS02415 | Not Available | - | 418497 - 419819 | 47391.8 |
| iclr family transcriptional regulator | TM1040_RS02420 | Not Available | + | 419964 - 420770 | 29442.4 |
| amidohydrolase family protein | TM1040_RS02425 | Not Available | + | 420767 - 421627 | 31884.0 |
| smc-scp complex subunit scpb | TM1040_RS02430 | Not Available | - | 421630 - 422220 | 21978.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.