Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | TM1040_RS02335 | Not Available | + | 400275 - 401978 | 63692.7 |
| duf3726 domain-containing protein | TM1040_RS02340 | Not Available | + | 401975 - 402625 | 22760.2 |
| ldh family oxidoreductase | TM1040_RS02345 | Not Available | + | 402686 - 403693 | 33900.5 |
| Trna-ala | Not Available | Not Available | + | 403923 - 403998 | Not Available |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | TM1040_RS02355 | Not Available | + | 404374 - 407385 | 109971.0 |
| lysr family transcriptional regulator | TM1040_RS02360 | Not Available | - | 407476 - 408393 | 33551.3 |
| gmc family oxidoreductase | TM1040_RS02365 | Not Available | + | 408549 - 410201 | 60622.7 |
| aldo/keto reductase | TM1040_RS02370 | Not Available | - | 410234 - 411202 | 34775.2 |
| l-fuconate dehydratase | TM1040_RS02375 | Not Available | - | 411219 - 412496 | 47280.6 |
| fumarylacetoacetate hydrolase family protein | TM1040_RS02380 | Not Available | - | 412493 - 413338 | 30038.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.