Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gfo/idh/moca family protein | TM1040_RS02240 | Not Available | + | 375128 - 376234 | 40667.7 |
| vit family protein | TM1040_RS02245 | Not Available | - | 376336 - 377040 | 23726.6 |
| lyttr family dna-binding domain-containing protein | TM1040_RS19660 | Not Available | - | 377231 - 377785 | 20383.5 |
| mipa/ompv family protein | TM1040_RS02255 | Not Available | + | 378322 - 379098 | 26924.4 |
| fumarylacetoacetate hydrolase family protein | TM1040_RS02260 | Not Available | + | 379109 - 380320 | 44430.4 |
| abc1 kinase family protein | TM1040_RS02265 | Not Available | - | 380407 - 381780 | 49814.1 |
| fad-binding domain-containing protein | TM1040_RS02270 | Not Available | - | 381777 - 383009 | 45623.3 |
| pas-domain containing protein | TM1040_RS19665 | Not Available | + | 383258 - 385885 | 95565.5 |
| response regulator | TM1040_RS19670 | Not Available | + | 385901 - 386266 | 13420.1 |
| response regulator | TM1040_RS02280 | Not Available | + | 386263 - 386979 | 26865.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.