Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytochrome-c peroxidase | TM1040_RS02190 | Not Available | - | 366235 - 367464 | 44712.7 |
| tetratricopeptide repeat protein | TM1040_RS02195 | Not Available | + | 367612 - 368055 | 16346.5 |
| dabb family protein | TM1040_RS02200 | Not Available | - | 368123 - 368437 | 11852.0 |
| trap transporter substrate-binding protein dctp | TM1040_RS02205 | Not Available | - | 368526 - 369584 | 38001.9 |
| trap transporter large permease | TM1040_RS02210 | Not Available | - | 369621 - 371096 | 52189.3 |
| trap transporter small permease | TM1040_RS02215 | Not Available | - | 371096 - 371686 | 21487.4 |
| flavin reductase family protein | TM1040_RS02220 | Not Available | - | 371744 - 372262 | 18911.3 |
| aldo/keto reductase family oxidoreductase | TM1040_RS02225 | Not Available | - | 372262 - 373152 | 32375.7 |
| llm class flavin-dependent oxidoreductase | TM1040_RS02230 | Not Available | - | 373152 - 374306 | 42526.4 |
| gntr family transcriptional regulator | TM1040_RS02235 | Not Available | + | 374409 - 375119 | 26759.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.