Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | TM1040_RS01990 | Not Available | + | 323837 - 324865 | 37473.6 |
| phosphodiesterase | TM1040_RS01995 | Not Available | + | 324875 - 325687 | 29184.7 |
| trap transporter large permease | TM1040_RS02000 | Not Available | - | 325731 - 327014 | 45026.2 |
| trap transporter small permease | TM1040_RS02005 | Not Available | - | 327007 - 327534 | 18986.9 |
| trap transporter substrate-binding protein | TM1040_RS02010 | Not Available | - | 327591 - 328571 | 34884.2 |
| nad(p)-dependent oxidoreductase | TM1040_RS02015 | Not Available | - | 328688 - 329566 | 30111.9 |
| aldehyde dehydrogenase family protein | TM1040_RS02020 | Not Available | - | 329654 - 331141 | 52074.4 |
| hypothetical protein | TM1040_RS02025 | Not Available | + | 331411 - 332034 | 22584.2 |
| ldh family oxidoreductase | TM1040_RS02030 | Not Available | - | 332127 - 333173 | 37392.6 |
| gntr family transcriptional regulator | TM1040_RS02035 | Not Available | + | 333330 - 334019 | 25865.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.