Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | TM1040_RS01940 | Not Available | - | 312880 - 314028 | 41590.9 |
| carbohydrate abc transporter permease | TM1040_RS01945 | Not Available | - | 314042 - 315049 | 37440.7 |
| abc transporter substrate-binding protein | TM1040_RS01950 | Not Available | - | 315194 - 316543 | 48482.6 |
| substrate-binding domain-containing protein | TM1040_RS01955 | Not Available | + | 316810 - 317850 | 37991.2 |
| gh1 family beta-glucosidase | TM1040_RS01960 | Not Available | + | 317847 - 319181 | 49940.8 |
| 6,7-dimethyl-8-ribityllumazine synthase | TM1040_RS01965 | Not Available | - | 319232 - 319702 | 16806.1 |
| laci family dna-binding transcriptional regulator | TM1040_RS01970 | Not Available | + | 320075 - 321163 | 38554.7 |
| abc transporter substrate-binding protein | TM1040_RS01975 | Not Available | + | 321168 - 322187 | 36531.9 |
| abc transporter permease | TM1040_RS01980 | Not Available | + | 322245 - 323048 | 28037.2 |
| abc transporter permease | TM1040_RS01985 | Not Available | + | 323052 - 323840 | 28330.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.