Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transposase | TM1040_RS00150 | Not Available | + | 39219 - 39572 | 12964.2 |
| hypothetical protein | TM1040_RS00155 | Not Available | + | 39882 - 40088 | 7609.93 |
| transposase | TM1040_RS00160 | Not Available | + | 40650 - 41243 | 21459.8 |
| relaxase/mobilization nuclease domain-containing protein | TM1040_RS00165 | Not Available | + | 41230 - 43440 | 82520.8 |
| type iv secretory system conjugative dna transfer family protein | TM1040_RS00170 | Not Available | + | 43449 - 45443 | 72595.5 |
| atp-binding protein | TM1040_RS00175 | Not Available | - | 45670 - 47679 | 72670.9 |
| hypothetical protein | TM1040_RS19810 | Not Available | - | 47907 - 48374 | 16440.0 |
| hypothetical protein | TM1040_RS00190 | Not Available | + | 49338 - 51461 | 77001.3 |
| transposase | TM1040_RS19815 | Not Available | - | 51563 - 51706 | 5617.38 |
| hypothetical protein | TM1040_RS00195 | Not Available | + | 52027 - 52281 | 8902.49 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.