Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| metallophosphoesterase family protein | TM1040_RS19560 | Not Available | + | 3190437 - 3191171 | 27217.1 |
| l-threonine 3-dehydrogenase | TM1040_RS19565 | Not Available | - | 3191378 - 3192409 | 36873.5 |
| glycine c-acetyltransferase | TM1040_RS19570 | Not Available | - | 3192426 - 3193610 | 42834.6 |
| helix-turn-helix domain-containing protein | TM1040_RS19575 | Not Available | - | 3193775 - 3194341 | 19793.4 |
| acetyl-coa c-acyltransferase family protein | TM1040_RS19580 | Not Available | + | 3194450 - 3195625 | 40467.0 |
| 2-polyprenylphenol 6-hydroxylase | TM1040_RS19585 | Not Available | - | 3195735 - 3197261 | 56330.1 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | TM1040_RS19590 | Not Available | - | 3197265 - 3198017 | 28153.7 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | TM1040_RS19595 | Not Available | + | 3198104 - 3198955 | 31313.7 |
| enoyl-coa hydratase | TM1040_RS19600 | Not Available | + | 3199021 - 3199797 | 27909.8 |
| 30s ribosomal protein s20 | TM1040_RS19605 | Not Available | + | 3200122 - 3200385 | 9702.86 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.