Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tigr00730 family rossman fold protein | TM1040_RS19510 | Not Available | + | 3180522 - 3181370 | 31515.6 |
| hypothetical protein | TM1040_RS19515 | Not Available | - | 3181566 - 3181769 | 7589.2 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | TM1040_RS19520 | Not Available | - | 3181937 - 3183130 | 44612.5 |
| invasion associated locus b family protein | TM1040_RS19525 | Not Available | - | 3183354 - 3183887 | 19084.5 |
| asparaginase | TM1040_RS19530 | Not Available | + | 3184117 - 3185124 | 35818.7 |
| ycii family protein | TM1040_RS19535 | Not Available | - | 3185138 - 3185458 | 11120.1 |
| tsup family transporter | TM1040_RS19540 | Not Available | - | 3185545 - 3186303 | 25880.4 |
| phosphoserine phosphatase serb | TM1040_RS19545 | Not Available | - | 3186312 - 3187187 | 30698.8 |
| phosphoserine transaminase | TM1040_RS19550 | Not Available | + | 3187424 - 3188569 | 40941.8 |
| phosphoglycerate dehydrogenase | TM1040_RS19555 | Not Available | + | 3188663 - 3190258 | 56527.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.