Ruegeria sp. TM1040

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. TM1040. This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. TM1040
StrainTM1040

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Pfiesteria piscicida
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhototroph
PathogenicityNot Available

Genome Summary

Ruegeria sp. TM1040

Accession NumberNC_008043.1

Gene Summary

Adenine Count

167632 bp

Thymine Count

166322 bp

Guanine Count

242456 bp

Cytosine Count

245378 bp

Genome Length

821788 bp

Protein-coding Genes

731 genes

Non-Coding Genes

27 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hutd family proteinTM1040_RS19460Not Available+3170058 - 317058818898.6
formimidoylglutamate deiminaseTM1040_RS19465Not Available-3170563 - 317192749322.6
imidazolonepropionaseTM1040_RS19470Not Available+3172003 - 317322042720.1
histidine ammonia-lyaseTM1040_RS19475Not Available+3173217 - 317474052847.0
n-formylglutamate deformylaseTM1040_RS19480Not Available+3174737 - 317551328973.0
urocanate hydrataseTM1040_RS19485Not Available+3175510 - 317719861657.3
voc family proteinTM1040_RS19490Not Available-3177254 - 317764314195.7
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseTM1040_RS19495Not Available-3177816 - 317864329411.1
gntr family transcriptional regulatorTM1040_RS19500Not Available-3178764 - 317936322755.5
threonine/serine dehydrataseTM1040_RS19505Not Available-3179412 - 318036532891.3

Displaying genes 3921 – 3930 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites