Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hutd family protein | TM1040_RS19460 | Not Available | + | 3170058 - 3170588 | 18898.6 |
| formimidoylglutamate deiminase | TM1040_RS19465 | Not Available | - | 3170563 - 3171927 | 49322.6 |
| imidazolonepropionase | TM1040_RS19470 | Not Available | + | 3172003 - 3173220 | 42720.1 |
| histidine ammonia-lyase | TM1040_RS19475 | Not Available | + | 3173217 - 3174740 | 52847.0 |
| n-formylglutamate deformylase | TM1040_RS19480 | Not Available | + | 3174737 - 3175513 | 28973.0 |
| urocanate hydratase | TM1040_RS19485 | Not Available | + | 3175510 - 3177198 | 61657.3 |
| voc family protein | TM1040_RS19490 | Not Available | - | 3177254 - 3177643 | 14195.7 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | TM1040_RS19495 | Not Available | - | 3177816 - 3178643 | 29411.1 |
| gntr family transcriptional regulator | TM1040_RS19500 | Not Available | - | 3178764 - 3179363 | 22755.5 |
| threonine/serine dehydratase | TM1040_RS19505 | Not Available | - | 3179412 - 3180365 | 32891.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.