Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | TM1040_RS19410 | Not Available | - | 3158821 - 3159513 | 25745.2 |
| glutathione s-transferase family protein | TM1040_RS19415 | Not Available | + | 3159600 - 3160313 | 26409.6 |
| ribonuclease r | TM1040_RS19420 | Not Available | - | 3160462 - 3162747 | 83765.3 |
| gnat family n-acetyltransferase | TM1040_RS19425 | Not Available | - | 3162863 - 3163285 | 15088.2 |
| succinyl-diaminopimelate desuccinylase | TM1040_RS19430 | Not Available | - | 3163282 - 3164427 | 40725.9 |
| hint domain-containing protein | TM1040_RS19435 | Not Available | + | 3164896 - 3165993 | 39880.1 |
| transporter substrate-binding domain-containing protein | TM1040_RS19440 | Not Available | + | 3166064 - 3167128 | 39712.1 |
| hypothetical protein | TM1040_RS19445 | Not Available | - | 3167180 - 3167545 | 13113.4 |
| choice-of-anchor l domain-containing protein | TM1040_RS19450 | Not Available | + | 3167703 - 3169283 | 55539.5 |
| gntr family transcriptional regulator | TM1040_RS19455 | Not Available | - | 3169277 - 3169978 | 26383.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.