Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease subunit | TM1040_RS19360 | Not Available | - | 3146254 - 3147135 | 33234.2 |
| abc transporter atp-binding protein | TM1040_RS19365 | Not Available | - | 3147135 - 3148274 | 42102.5 |
| polyamine abc transporter substrate-binding protein | TM1040_RS19370 | Not Available | - | 3148365 - 3149453 | 39850.5 |
| gntr family transcriptional regulator | TM1040_RS19375 | Not Available | + | 3149540 - 3150286 | 27330.9 |
| aspartate aminotransferase family protein | TM1040_RS19380 | Not Available | + | 3150350 - 3151747 | 50205.0 |
| abc transporter atp-binding protein | TM1040_RS19385 | Not Available | + | 3152051 - 3153151 | 40789.0 |
| extracellular solute-binding protein | TM1040_RS19390 | Not Available | + | 3153256 - 3154362 | 40390.2 |
| abc transporter permease | TM1040_RS19395 | Not Available | + | 3154473 - 3156098 | 59386.5 |
| abc transporter permease | TM1040_RS19400 | Not Available | + | 3156106 - 3157281 | 42192.6 |
| lytic murein transglycosylase | TM1040_RS19405 | Not Available | - | 3157346 - 3158713 | 49687.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.