Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 3-keto-5-aminohexanoate cleavage protein | TM1040_RS01895 | Not Available | + | 300578 - 301495 | 32491.2 |
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS01900 | Not Available | + | 301551 - 302972 | 51210.3 |
| bcct family transporter | TM1040_RS01905 | Not Available | + | 303158 - 304633 | 54504.0 |
| sensor histidine kinase | TM1040_RS01910 | Not Available | + | 304724 - 306997 | 84582.6 |
| sensor histidine kinase | TM1040_RS01915 | Not Available | + | 307142 - 308299 | 43094.4 |
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS01920 | Not Available | - | 308585 - 308812 | 8239.82 |
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS19890 | Not Available | - | 308862 - 309337 | 17732.2 |
| Trna-arg | Not Available | Not Available | + | 309837 - 309913 | Not Available |
| abc transporter atp-binding protein | TM1040_RS01930 | Not Available | - | 310065 - 311162 | 39537.1 |
| alpha-amylase family glycosyl hydrolase | TM1040_RS01935 | Not Available | - | 311182 - 312834 | 61757.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.