Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| flagellar basal-body rod protein flgg | TM1040_RS19250 | Not Available | - | 3129230 - 3130015 | 27912.6 |
| flagellar hook-basal body complex protein | TM1040_RS19255 | Not Available | - | 3130025 - 3130741 | 25456.9 |
| flagellar biosynthetic protein fliq | TM1040_RS19260 | Not Available | - | 3130741 - 3131019 | 9826.59 |
| flagellar hook-basal body complex protein flie | TM1040_RS19265 | Not Available | - | 3131023 - 3131319 | 10621.5 |
| flagellar basal body rod protein flgc | TM1040_RS19270 | Not Available | - | 3131343 - 3131735 | 14656.1 |
| flgb family protein | TM1040_RS19275 | Not Available | - | 3131752 - 3132141 | 14098.4 |
| flii/yscn family atpase | TM1040_RS19280 | Not Available | + | 3132230 - 3133558 | 47418.4 |
| is3 family transposase | TM1040_RS19290 | Not Available | + | 3133720 - 3134855 | 39701.3 |
| is3-like element issisp1 family transposase | TM1040_RS19300 | Not Available | + | 3134929 - 3136025 | 42519.2 |
| duf1217 domain-containing protein | TM1040_RS19305 | Not Available | - | 3136295 - 3138247 | 71916.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.