Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | TM1040_RS19100 | Not Available | - | 3098183 - 3099124 | 33685.7 |
| cation transporter | TM1040_RS19105 | Not Available | - | 3099209 - 3099859 | 22575.5 |
| merr family transcriptional regulator | TM1040_RS19110 | Not Available | + | 3099944 - 3100360 | 15216.3 |
| sdr family oxidoreductase | TM1040_RS19115 | Not Available | - | 3100370 - 3101263 | 32463.6 |
| hypothetical protein | TM1040_RS19120 | Not Available | + | 3101671 - 3102390 | 26399.7 |
| abc transporter substrate-binding protein | TM1040_RS19125 | Not Available | + | 3102377 - 3103309 | 33034.2 |
| feccd family abc transporter permease | TM1040_RS19130 | Not Available | + | 3103310 - 3104317 | 35207.6 |
| abc transporter atp-binding protein | TM1040_RS19135 | Not Available | + | 3104307 - 3105140 | 30355.2 |
| methyl-accepting chemotaxis protein | TM1040_RS19140 | Not Available | - | 3105098 - 3107272 | 78577.2 |
| flagellar motor protein motb | TM1040_RS19145 | Not Available | + | 3107839 - 3108678 | 30139.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.