Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphate abc transporter substrate-binding/ompa family protein | TM1040_RS19050 | Not Available | + | 3088950 - 3090503 | 55857.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | TM1040_RS19055 | Not Available | - | 3090662 - 3092599 | 68540.4 |
| polyprenyl synthetase family protein | TM1040_RS19060 | Not Available | - | 3092630 - 3093493 | 30460.4 |
| exodeoxyribonuclease vii small subunit | TM1040_RS19065 | Not Available | - | 3093500 - 3093745 | 8869.38 |
| histone deacetylase family protein | TM1040_RS19070 | Not Available | - | 3093742 - 3094668 | 33477.6 |
| response regulator | TM1040_RS19075 | Not Available | - | 3094788 - 3095492 | 26355.0 |
| marr family winged helix-turn-helix transcriptional regulator | TM1040_RS19080 | Not Available | - | 3095489 - 3096001 | 19123.9 |
| branched-chain amino acid aminotransferase | TM1040_RS19085 | Not Available | + | 3096162 - 3097028 | 32008.2 |
| organic hydroperoxide resistance protein | TM1040_RS19090 | Not Available | - | 3097197 - 3097625 | 14754.4 |
| marr family winged helix-turn-helix transcriptional regulator | TM1040_RS19095 | Not Available | + | 3097733 - 3098164 | 16084.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.