Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | TM1040_RS19000 | Not Available | + | 3075504 - 3076355 | 30781.6 |
| ribosome maturation factor rimp | TM1040_RS19005 | Not Available | + | 3076592 - 3077203 | 22393.4 |
| transcription termination factor nusa | TM1040_RS19010 | Not Available | + | 3077203 - 3078819 | 59966.7 |
| rna-binding protein | TM1040_RS19015 | Not Available | + | 3078849 - 3079466 | 22211.7 |
| translation initiation factor if-2 | TM1040_RS19020 | Not Available | + | 3079475 - 3081982 | 89517.1 |
| 8-oxo-dgtp diphosphatase mutt | TM1040_RS19025 | Not Available | - | 3082512 - 3082922 | 15338.8 |
| bifunctional glutamate n-acetyltransferase/amino-acid acetyltransferase argj | TM1040_RS19030 | Not Available | - | 3082919 - 3084145 | 42400.2 |
| peptidylprolyl isomerase | TM1040_RS19035 | Not Available | - | 3084178 - 3085029 | 30933.2 |
| preprotein translocase subunit seca | TM1040_RS19040 | Not Available | + | 3085207 - 3087894 | 100456.0 |
| hypothetical protein | TM1040_RS19045 | Not Available | + | 3088030 - 3088926 | 31979.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.