Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase | TM1040_RS18950 | Not Available | + | 3068040 - 3068657 | 23334.9 |
| hypothetical protein | TM1040_RS18955 | Not Available | + | 3068800 - 3068982 | 5755.2 |
| ferrochelatase | TM1040_RS18960 | Not Available | - | 3069070 - 3070134 | 40437.2 |
| hypothetical protein | TM1040_RS18965 | Not Available | - | 3070236 - 3071075 | 31214.9 |
| comf family protein | TM1040_RS18970 | Not Available | + | 3071087 - 3071818 | 26273.1 |
| glutaredoxin 3 | TM1040_RS18975 | Not Available | + | 3071890 - 3072147 | 9194.1 |
| carbon-nitrogen hydrolase family protein | TM1040_RS18980 | Not Available | + | 3072152 - 3072985 | 29946.5 |
| marr family winged helix-turn-helix transcriptional regulator | TM1040_RS18985 | Not Available | + | 3072985 - 3073425 | 16100.7 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | TM1040_RS18990 | Not Available | - | 3073732 - 3074475 | 27229.4 |
| prolyl aminopeptidase | TM1040_RS18995 | Not Available | + | 3074527 - 3075507 | 36749.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.