Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nudix hydrolase | TM1040_RS18900 | Not Available | - | 3057398 - 3057841 | 16587.0 |
| hsp33 family molecular chaperone hslo | TM1040_RS18905 | Not Available | + | 3057918 - 3058895 | 35354.7 |
| coa pyrophosphatase | TM1040_RS18910 | Not Available | + | 3058901 - 3059500 | 22004.5 |
| cca trna nucleotidyltransferase | TM1040_RS18915 | Not Available | + | 3059497 - 3060657 | 42004.2 |
| abc transporter atp-binding protein | TM1040_RS18920 | Not Available | + | 3060885 - 3062723 | 67689.5 |
| abc transporter atp-binding protein | TM1040_RS18925 | Not Available | + | 3062720 - 3064564 | 65930.9 |
| class i sam-dependent rna methyltransferase | TM1040_RS18930 | Not Available | + | 3064623 - 3065867 | 44897.0 |
| ion transporter | TM1040_RS18935 | Not Available | + | 3065895 - 3066680 | 29229.4 |
| murein l,d-transpeptidase family protein | TM1040_RS18940 | Not Available | + | 3066755 - 3067270 | 18674.2 |
| cap domain-containing protein | TM1040_RS18945 | Not Available | - | 3067377 - 3067871 | 18108.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.