Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribokinase | TM1040_RS18850 | Not Available | + | 3049119 - 3049991 | 29944.7 |
| peptide-methionine (s)-s-oxide reductase msra | TM1040_RS18855 | Not Available | - | 3050052 - 3050723 | 24488.9 |
| scp2 sterol-binding domain-containing protein | TM1040_RS18860 | Not Available | - | 3050862 - 3051143 | 9977.37 |
| duf1036 domain-containing protein | TM1040_RS18865 | Not Available | - | 3051234 - 3051620 | 14256.5 |
| duf1810 domain-containing protein | TM1040_RS18870 | Not Available | - | 3051722 - 3052183 | 17093.4 |
| argininosuccinate synthase | TM1040_RS18875 | Not Available | - | 3052183 - 3053406 | 45388.0 |
| hypothetical protein | TM1040_RS18880 | Not Available | + | 3053537 - 3054292 | 27049.3 |
| threonine ammonia-lyase ilva | TM1040_RS18885 | Not Available | + | 3054365 - 3055591 | 44775.9 |
| hpt domain-containing protein | TM1040_RS18890 | Not Available | - | 3055623 - 3055946 | 12134.2 |
| pp2c family protein-serine/threonine phosphatase | TM1040_RS18895 | Not Available | + | 3056120 - 3057391 | 47119.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.