Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| parb/repb/spo0j family partition protein | TM1040_RS18800 | Not Available | + | 3037330 - 3038229 | 32813.2 |
| yban family protein | TM1040_RS18805 | Not Available | - | 3038219 - 3038572 | 12630.9 |
| radical sam family heme chaperone hemw | TM1040_RS18810 | Not Available | - | 3038576 - 3039730 | 42699.4 |
| rdgb/ham1 family non-canonical purine ntp pyrophosphatase | TM1040_RS18815 | Not Available | - | 3039723 - 3040337 | 21847.7 |
| ribonuclease ph | TM1040_RS18820 | Not Available | - | 3040334 - 3041047 | 25214.4 |
| heat-inducible transcriptional repressor hrca | TM1040_RS18825 | Not Available | + | 3041186 - 3042250 | 38932.3 |
| nucleotide exchange factor grpe | TM1040_RS18830 | Not Available | + | 3042260 - 3042823 | 20725.2 |
| dna mismatch repair protein muts | TM1040_RS18835 | Not Available | - | 3042910 - 3045549 | 95743.5 |
| flagellin | TM1040_RS18840 | Not Available | - | 3045670 - 3046518 | 29354.7 |
| nadp-dependent malic enzyme | TM1040_RS18845 | Not Available | + | 3046844 - 3049099 | 81327.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.