Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit epsilon | TM1040_RS18750 | Not Available | - | 3027669 - 3028400 | 26685.7 |
| dephospho-coa kinase | TM1040_RS18755 | Not Available | - | 3028393 - 3028986 | 21503.1 |
| shikimate dehydrogenase | TM1040_RS18760 | Not Available | - | 3028986 - 3029816 | 29725.7 |
| maf family protein | TM1040_RS18765 | Not Available | - | 3029813 - 3030412 | 22240.0 |
| copd family protein | TM1040_RS18770 | Not Available | + | 3030831 - 3031286 | 17721.3 |
| transcription termination factor rho | TM1040_RS18775 | Not Available | + | 3031417 - 3032688 | 47204.8 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | TM1040_RS18780 | Not Available | + | 3032719 - 3034005 | 46403.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | TM1040_RS18785 | Not Available | + | 3034018 - 3035892 | 68701.9 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | TM1040_RS18790 | Not Available | + | 3035889 - 3036506 | 22677.2 |
| para family protein | TM1040_RS18795 | Not Available | + | 3036499 - 3037311 | 29868.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.