Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf1127 domain-containing protein | TM1040_RS18700 | Not Available | - | 3019551 - 3019745 | 6922.21 |
| atp-dependent protease subunit hslv | TM1040_RS18705 | Not Available | + | 3019981 - 3020538 | 19571.2 |
| membrane protein | TM1040_RS18710 | Not Available | + | 3020535 - 3021590 | 37359.4 |
| atp-dependent protease atpase subunit hslu | TM1040_RS18715 | Not Available | + | 3021606 - 3022916 | 48371.2 |
| alpha/beta hydrolase | TM1040_RS18720 | Not Available | + | 3022996 - 3024117 | 41665.1 |
| smr/muts family protein | TM1040_RS18725 | Not Available | - | 3024125 - 3024727 | 22441.4 |
| murein transglycosylase a | TM1040_RS18730 | Not Available | - | 3024727 - 3025785 | 39133.0 |
| tim44/tima family putative adaptor protein | TM1040_RS18735 | Not Available | - | 3025782 - 3026438 | 23820.1 |
| fxsa family protein | TM1040_RS18740 | Not Available | + | 3026553 - 3027050 | 18035.2 |
| protein-export chaperone secb | TM1040_RS18745 | Not Available | + | 3027115 - 3027609 | 18231.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.