Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| actr/prra/rega family redox response regulator transcription factor | TM1040_RS18650 | Not Available | - | 3006131 - 3006685 | 20125.1 |
| sco family protein | TM1040_RS18655 | Not Available | - | 3006766 - 3007389 | 22496.5 |
| sensor histidine kinase regb | TM1040_RS18660 | Not Available | + | 3007508 - 3008905 | 51384.9 |
| pas-domain containing protein | TM1040_RS18665 | Not Available | + | 3008991 - 3010541 | 57947.2 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | TM1040_RS18670 | Not Available | + | 3010583 - 3011059 | 17552.8 |
| aminoglycoside phosphotransferase family protein | TM1040_RS18675 | Not Available | + | 3011056 - 3012054 | 37763.7 |
| nucleotidyltransferase family protein | TM1040_RS18680 | Not Available | + | 3012051 - 3012731 | 24526.5 |
| double-strand break repair protein addb | TM1040_RS18685 | Not Available | + | 3012733 - 3015666 | 108850.0 |
| double-strand break repair helicase adda | TM1040_RS18690 | Not Available | + | 3015663 - 3019028 | 123655.0 |
| thioredoxin | TM1040_RS18695 | Not Available | + | 3019090 - 3019410 | 11152.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.