Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen-iii synthase | TM1040_RS18600 | Not Available | - | 2997862 - 2998572 | 25051.3 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | TM1040_RS18605 | Not Available | + | 2998674 - 2999771 | 38363.3 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | TM1040_RS18610 | Not Available | + | 2999768 - 3000730 | 33157.2 |
| ycii family protein | TM1040_RS18615 | Not Available | + | 3000732 - 3001004 | 9757.73 |
| eve domain-containing protein | TM1040_RS18620 | Not Available | + | 3001004 - 3001426 | 16086.0 |
| duf1761 domain-containing protein | TM1040_RS18625 | Not Available | + | 3001480 - 3001875 | 13616.9 |
| duf2853 family protein | TM1040_RS18630 | Not Available | - | 3002076 - 3002417 | 12484.0 |
| adenosylhomocysteinase | TM1040_RS18635 | Not Available | - | 3002642 - 3004027 | 50670.8 |
| hd domain-containing protein | TM1040_RS18640 | Not Available | + | 3004306 - 3004902 | 22060.8 |
| glycosyltransferase family 61 protein | TM1040_RS18645 | Not Available | - | 3004905 - 3006122 | 45064.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.