Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Trna-leu | Not Available | Not Available | + | 2984654 - 2984740 | Not Available |
| complex i ndufa9 subunit family protein | TM1040_RS18555 | Not Available | + | 2984942 - 2985931 | 35201.4 |
| undecaprenyl-diphosphate phosphatase | TM1040_RS18560 | Not Available | - | 2985990 - 2986793 | 28440.8 |
| nad(p)-dependent oxidoreductase | TM1040_RS18565 | Not Available | + | 2987026 - 2988468 | 52178.8 |
| glutamate synthase large subunit | TM1040_RS18570 | Not Available | + | 2988543 - 2993075 | 163880.0 |
| monofunctional biosynthetic peptidoglycan transglycosylase | TM1040_RS18575 | Not Available | + | 2993220 - 2993963 | 27505.2 |
| glutathione s-transferase family protein | TM1040_RS18580 | Not Available | + | 2994033 - 2994698 | 25569.6 |
| Trna-thr | Not Available | Not Available | + | 2994766 - 2994841 | Not Available |
| heme biosynthesis protein hemy | TM1040_RS18590 | Not Available | - | 2994998 - 2996482 | 54068.9 |
| cog4223 family protein | TM1040_RS18595 | Not Available | - | 2996493 - 2997812 | 46274.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.