Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| chloramphenicol phosphotransferase cpt family protein | TM1040_RS18500 | Not Available | + | 2975043 - 2975564 | 18877.3 |
| cytochrome c1 | TM1040_RS18505 | Not Available | - | 2975706 - 2976497 | 28489.0 |
| cytochrome b | TM1040_RS18510 | Not Available | - | 2976516 - 2977844 | 50047.7 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | TM1040_RS18515 | Not Available | - | 2977860 - 2978420 | 20015.4 |
| glutathione s-transferase | TM1040_RS18520 | Not Available | - | 2978645 - 2979247 | 22035.4 |
| atp-binding cassette domain-containing protein | TM1040_RS18525 | Not Available | - | 2979365 - 2980060 | 24702.9 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | TM1040_RS18530 | Not Available | - | 2980047 - 2981618 | 55467.0 |
| thiamine abc transporter substrate binding subunit | TM1040_RS18535 | Not Available | - | 2981594 - 2982574 | 34862.7 |
| chorismate synthase | TM1040_RS18540 | Not Available | + | 2983051 - 2984163 | 39801.2 |
| Trna-leu | Not Available | Not Available | + | 2984411 - 2984497 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.