Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | TM1040_RS18450 | Not Available | + | 2964165 - 2965082 | 31854.3 |
| peptide-methionine (r)-s-oxide reductase msrb | TM1040_RS18455 | Not Available | + | 2965204 - 2965653 | 16539.2 |
| peptide-methionine (s)-s-oxide reductase msra | TM1040_RS18460 | Not Available | + | 2965650 - 2966165 | 19443.6 |
| hydantoinase/oxoprolinase n-terminal domain-containing protein | TM1040_RS18465 | Not Available | - | 2966243 - 2968249 | 69618.4 |
| trna epoxyqueuosine(34) reductase queg | TM1040_RS18470 | Not Available | - | 2968323 - 2969366 | 38540.9 |
| serine hydrolase domain-containing protein | TM1040_RS18475 | Not Available | - | 2969475 - 2970821 | 48850.6 |
| alginate export family protein | TM1040_RS18480 | Not Available | - | 2970802 - 2972226 | 50909.2 |
| Trna-lys | Not Available | Not Available | + | 2972614 - 2972689 | Not Available |
| diaminopimelate epimerase | TM1040_RS18490 | Not Available | + | 2972936 - 2973763 | 29639.2 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | TM1040_RS18495 | Not Available | + | 2973760 - 2975025 | 46698.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.