Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hydrogen peroxide-inducible genes activator | TM1040_RS18400 | Not Available | + | 2953530 - 2954453 | 33732.1 |
| carnitinyl-coa dehydratase | TM1040_RS18405 | Not Available | - | 2954463 - 2955251 | 28308.7 |
| acetate--coa ligase family protein | TM1040_RS18410 | Not Available | - | 2955248 - 2957287 | 71652.6 |
| selt/selw/selh family protein | TM1040_RS18415 | Not Available | - | 2957294 - 2957608 | 11690.9 |
| acyl-coa dehydrogenase family protein | TM1040_RS18420 | Not Available | - | 2957611 - 2958774 | 43183.5 |
| glxa family transcriptional regulator | TM1040_RS18425 | Not Available | + | 2958859 - 2959806 | 34869.0 |
| arsenate reductase family protein | TM1040_RS18430 | Not Available | - | 2959852 - 2960235 | 13781.8 |
| adenine deaminase | TM1040_RS18435 | Not Available | + | 2960323 - 2962128 | 63892.5 |
| amp nucleosidase | TM1040_RS18440 | Not Available | + | 2962121 - 2963587 | 54072.1 |
| hu family dna-binding protein | TM1040_RS18445 | Not Available | + | 2963731 - 2964024 | 10311.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.