Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase family protein | TM1040_RS18350 | Not Available | - | 2941116 - 2942498 | 49356.8 |
| glutamine synthetase family protein | TM1040_RS18355 | Not Available | - | 2942601 - 2943953 | 50034.5 |
| trap transporter substrate-binding protein | TM1040_RS18360 | Not Available | - | 2944029 - 2945063 | 38470.3 |
| trap transporter large permease subunit | TM1040_RS18365 | Not Available | - | 2945118 - 2946437 | 47580.6 |
| trap transporter small permease subunit | TM1040_RS18370 | Not Available | - | 2946434 - 2947021 | 22413.7 |
| n-formylglutamate amidohydrolase | TM1040_RS18375 | Not Available | - | 2947018 - 2947782 | 27456.4 |
| murr/rpir family transcriptional regulator | TM1040_RS18380 | Not Available | + | 2947896 - 2948753 | 32288.8 |
| amp-binding protein | TM1040_RS18385 | Not Available | + | 2948817 - 2949971 | 41877.2 |
| thiolase family protein | TM1040_RS18390 | Not Available | + | 2949971 - 2951074 | 37730.3 |
| catalase/peroxidase hpi | TM1040_RS18395 | Not Available | - | 2951135 - 2953351 | 80290.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.