Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 1c | TM1040_RS18300 | Not Available | - | 2923147 - 2925219 | 74272.7 |
| alpha-2-macroglobulin family protein | TM1040_RS18305 | Not Available | - | 2925324 - 2930771 | 194296.0 |
| response regulator | TM1040_RS18310 | Not Available | + | 2930923 - 2933208 | 83842.3 |
| dihydrolipoyl dehydrogenase | TM1040_RS18315 | Not Available | - | 2933253 - 2934611 | 47328.4 |
| dihydrolipoamide acetyltransferase family protein | TM1040_RS18320 | Not Available | - | 2934612 - 2935877 | 45405.8 |
| alpha-ketoacid dehydrogenase subunit beta | TM1040_RS18325 | Not Available | - | 2935882 - 2936895 | 36677.8 |
| 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha | TM1040_RS18330 | Not Available | - | 2936897 - 2938138 | 45011.1 |
| glu/leu/phe/val family dehydrogenase | TM1040_RS18335 | Not Available | - | 2938135 - 2939205 | 37074.0 |
| lrp/asnc family transcriptional regulator | TM1040_RS18340 | Not Available | + | 2939325 - 2939792 | 17535.4 |
| iron-containing alcohol dehydrogenase | TM1040_RS18345 | Not Available | - | 2939877 - 2941022 | 40035.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.