Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS19885 | Not Available | + | 276348 - 277476 | 42304.4 |
| histidine kinase n-terminal 7tm domain-containing protein | TM1040_RS19655 | Not Available | - | 277819 - 280020 | 79484.9 |
| hypothetical protein | TM1040_RS01810 | Not Available | - | 280321 - 280914 | 21665.2 |
| hypothetical protein | TM1040_RS20180 | Not Available | + | 280939 - 281112 | 6691.77 |
| ybay family lipoprotein | TM1040_RS01815 | Not Available | + | 281501 - 281905 | 14897.3 |
| dmt family transporter | TM1040_RS01820 | Not Available | - | 282061 - 282978 | 32010.6 |
| tautomerase family protein | TM1040_RS01825 | Not Available | - | 283051 - 283272 | 7737.19 |
| nuclear transport factor 2 family protein | TM1040_RS01830 | Not Available | - | 283277 - 283657 | 14521.2 |
| lysr family transcriptional regulator | TM1040_RS01835 | Not Available | - | 284032 - 284922 | 32313.1 |
| flavodoxin family protein | TM1040_RS01840 | Not Available | + | 285111 - 285689 | 20311.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.